Release 4.0.
MIP is a pipeline for clinical analysis of whole exome and whole genome sequence data.
Contents:
- MIP - Mutation Identification Pipeline
- Change Log
- Installation
- Setup
- MIP Analysis
- Start standard analysis
- Excluding a program from the analysis
- Skipping a already processed module i.e expect that the ouput has already been generated
- Simulate standard analysis
- Rerun analysis using exactly the same parameters as last analysis run
- Rerun analysis using exactly the same parameters as last analysis run, but in simulation mode
- Generate all supported standard programs
- You can also modulate the mode of ‘-pp’ using -ppm:
- Adding a new program
- Structure
- vcfParser
- QCCollect
- rank_modelv1.18
- rank_modelv1.11
- rank_modelv1.5
- svrank_modelv1.0
- Dynamic Configuration File
- Pedigree File
- Individual Identification Number (IDN)
- The Code